SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   CHIP-Seq analysis (http://seqanswers.com/forums/showthread.php?t=29086)

slny 04-07-2013 02:05 PM

CHIP-Seq analysis
 
I'm very new in ChIP Seq data analysis.

Is there any CHIP Seq analysis pipeline that I can use? Any tutorial of CHIP Seq data analysis?

Thanks,
Slny

Jluis 04-08-2013 04:57 AM

Hi slny,

Have a look at this pipeline. It has been set up by the ENCODE project as a reference for ChIPseq analysis.

https://sites.google.com/site/anshul...e/projects/idr

By the way, I'd like to know which is the opinion of the bioinformatic analysts community about this particular ENCODE pipeline.

;)

With best wishes

SylvainL 06-22-2016 01:49 AM

Hi, it's an old thread but I have a comment...

I had to re-run the same pipeline on the same ChIPseqs using actually the ENCODE guideline and I am facing something I didn't expect: I do not get the same results! Not by far but still different. Did you experience that? Can it be due to the idr step?


All times are GMT -8. The time now is 11:21 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.