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-   -   Site with raw reads of Drosophila Melanogaster (http://seqanswers.com/forums/showthread.php?t=40125)

NGS_New_User 01-21-2014 09:30 AM

Site with raw reads of Drosophila Melanogaster
 
Hi Everyone,

I have assembled a draft genome de novo of a non model organism (insect). I would like to compare it with Drosophila melanogaster (similarities etc) My plan is to map the Drosophila reads onto it and see how much of it will map onto our draft genome. My question is, where can I find the raw reads of D.melanogaster? What site can one direct me to that I can access D.mel reads?

Thanks, and any info will be appreciated!!

GenoMax 01-21-2014 10:03 AM

ENA: http://www.ebi.ac.uk/ena/data/search...aster%20genome

SRA: http://www.ncbi.nlm.nih.gov/Traces/s...e+genome&go=Go

First entry in ENA looks promising but keep in mind that raw reads that went into the genome build may not be easily accessible.

NGS_New_User 01-21-2014 11:29 AM

Thank you so so much GenoMax, I really do appreciate it :-)


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