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-   -   Convert CASAVA file to VCF (http://seqanswers.com/forums/showthread.php?t=9231)

danielsbrewer 02-03-2011 01:42 AM

Convert CASAVA file to VCF
 
Are there any tools to convert from the CASAVA file format to VCF? I would like to be able to view the output in IGV but I am having problems. Newbie in this kind of thing.

krish 01-18-2012 03:24 PM

I'm also looking for something that does that. But after looking and looking and seeing many people ask for this but no one answer, I've decided to write my own. Would you be interested in helping me test it?

-krish

jpunetha 03-02-2012 12:10 PM

I have been looking for this too, when I contacted Illumina they said there was no way but the community has figured out how to do this and to refer to SeqAnswers!! but i don't see the thread..

prog_spart 08-19-2012 10:40 PM

cassava to vcf
 
Hi guyz

Has any one figured it out to parse cassava file to VCF. If yes, please post that information.
Many thanks

sp20

selen 03-13-2013 08:19 AM

Any luck in getting CASAVA variants into VCF format????


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