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Are there any tools to convert from the CASAVA file format to VCF? I would like to be able to view the output in IGV but I am having problems. Newbie in this kind of thing.
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I'm also looking for something that does that. But after looking and looking and seeing many people ask for this but no one answer, I've decided to write my own. Would you be interested in helping me test it?
-krish -
I have been looking for this too, when I contacted Illumina they said there was no way but the community has figured out how to do this and to refer to SeqAnswers!! but i don't see the thread..Comment
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cassava to vcf
Hi guyz
Has any one figured it out to parse cassava file to VCF. If yes, please post that information.
Many thanks
sp20Comment
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Any luck in getting CASAVA variants into VCF format????Comment
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Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...04-04-2024, 04:25 PM -
Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...03-22-2024, 06:39 AM
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