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-   -   MAQ Simulator SNP/Indel Output (http://seqanswers.com/forums/showthread.php?t=9419)

peveralldubois 02-12-2011 04:58 PM

MAQ Simulator SNP/Indel Output
 
One of the output generated by maq simulate (haploid mode)
looks like this:

Code:

chr22  16068102        C      M      +
chr22  16068255        A      R      +
chr22  16069235        G      A      -

In the fourth column you found bases that are not always ATCG,
in the above case: M and R.

What are they?

Is there a way to convert those bases into ACGT?

csoong 02-12-2011 07:30 PM

definitely, google IUPAC nucleotide codes and you'll find out


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