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-   -   BLAST output parsing in R? (http://seqanswers.com/forums/showthread.php?t=9052)

rdu 01-24-2011 12:46 PM

BLAST output parsing in R?
 
Is there a package, or some special way to parse BLAST output by programming in R? Thanks.

NicoBxl 01-25-2011 12:14 AM

the easiest way is to produce a tabular output from blast (-m 8 param I think ) and then to read this output in R with the command

var <- read.table(out.blast , sep="\t")

sdarko 01-25-2011 05:21 AM

Use "-outfmt 6" to get tabular output from blast.

Sam

rdu 01-25-2011 07:25 AM

Got it, thank you!


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