Hi Members,
I'm working on bacteria genome, illumina Hiseq paired end reads.
Used:
- trimmomatic with illumina adapter file.
- spades for assembly with careful flag, bayes hammer correction.
I get 2 fasta files: contigs and scaffolds.
Contigs and scaffolds file give output in below fashion:
scaffolds-
contigs-
My question:
Does cov_1.07407 and cov_291.815 refer to coverage of the contig/scaffold?
Thank you.
I'm working on bacteria genome, illumina Hiseq paired end reads.
Used:
- trimmomatic with illumina adapter file.
- spades for assembly with careful flag, bayes hammer correction.
I get 2 fasta files: contigs and scaffolds.
Contigs and scaffolds file give output in below fashion:
scaffolds-
>NODE_452_length_82_cov_291.815_ID_903
>NODE_488_length_109_cov_1.07407_ID_975
Does cov_1.07407 and cov_291.815 refer to coverage of the contig/scaffold?
Thank you.
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