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-   -   unaligned reads of tophat (http://seqanswers.com/forums/showthread.php?t=10491)

ae_ucla 04-01-2011 12:03 PM

unaligned reads of tophat
 
Does anyone know a way to see which reads from tophat are unaligned? I figured out how to do this in bowtie with the --un and --max options, but does someone have a way to do this in tophat?

RockChalkJayhawk 04-07-2011 10:06 AM

Quote:

Originally Posted by ae_ucla (Post 38616)
Does anyone know a way to see which reads from tophat are unaligned? I figured out how to do this in bowtie with the --un and --max options, but does someone have a way to do this in tophat?

Your answer can be found here


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