Hello,
I have a quick and simple questions: Is there a ready-to-use tool which allows me to re-write the strand information in a BAM file, such that reads which mapped on the forward strand are stored as mapping to the reverse strand and vice-versa?
I know how to do it with samtools and awk, but I was wondering if there was a faster solution without going through an intermediate SAM file.
Cheers, Daniel
I have a quick and simple questions: Is there a ready-to-use tool which allows me to re-write the strand information in a BAM file, such that reads which mapped on the forward strand are stored as mapping to the reverse strand and vice-versa?
I know how to do it with samtools and awk, but I was wondering if there was a faster solution without going through an intermediate SAM file.
Cheers, Daniel
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