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-   -   16S vs shotgun (http://seqanswers.com/forums/showthread.php?t=67465)

fanli 04-08-2016 11:23 AM

16S vs shotgun
 
Have people done detailed comparisons of bacterial communities profiled using amplicon (e.g. 16S) versus shotgun sequencing? I know HMP has done this for certain samples, but I can't seem to find any papers describing their results.

Specifically, I'm looking to see what sort of M^2 values people have seen in Procrustes analysis. For example, Figure 4 of this paper doesn't report M2 values, only p-values which are known to be highly inflated and unreliable...
http://microbiomejournal.biomedcentr...168-015-0110-9


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