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Antony03 05-18-2015 08:57 AM

tblastn bug?

I have a problem with tblastn. I tried to research this protein sequence:


In the draft sequence with the accession number: CDBI00000000.1

The problem is that the result is truncated, which is a non-sense since the protein sequence come from this accession number! I tried locally with tfasty36 and there is no problem.

Is someone has an idea?

Thank you!

maubp 05-29-2015 05:28 AM

By default BLAST uses low complexity filters to remove/mask some of the sequence. Try turning off these filters?

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