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-   -   Database containing links between PubMed-Publications and Gene Names (http://seqanswers.com/forums/showthread.php?t=94565)

fjkvfhjkgjkkhfdsd 05-26-2020 09:12 AM

Database containing links between PubMed-Publications and Gene Names
 
Does a database exist which contains links between PubMed-Publications and Gene Names? Use Case: I want to find all relevant PubMed-Publications (PubMed-Ids) for a specific Gene Name. Many thanks and best regards.

fjkvfhjkgjkkhfdsd 05-26-2020 09:35 AM

Example: Get all publications for Cdc45 (ENSMUSG00000000028)

GenoMax 05-26-2020 09:46 AM

You can check Entrezdirect from NCBI. Use it to do pubmed database searches like this.

Code:

esearch -db pubmed -query "CDC45 [GENE]" | efetch -format abstract

fjkvfhjkgjkkhfdsd 05-26-2020 10:43 AM

Is it also possible to do the query as HTTP request?
Many Thanks.

GenoMax 05-26-2020 12:07 PM

Yes it should be possible. Take a look at this page.


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