I want to use hisat2. According to the manual, "Use extract_splice_sites.py (in the HISAT2 package) to extract splice sites from a GTF file", I do it as:
bac@bac-X10DAi:~/hisat2-2.0.0-beta$ python extract_splice_sites.py mus.gtf > s.txt
the mus.gtf is in the hisat2-2.0.0-beta folder, but the output s.txt is empty!!!
I do not know where is wrong???
bac@bac-X10DAi:~/hisat2-2.0.0-beta$ python extract_splice_sites.py mus.gtf > s.txt
the mus.gtf is in the hisat2-2.0.0-beta folder, but the output s.txt is empty!!!
I do not know where is wrong???
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