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sivasubramani 08-26-2011 02:02 AM

Rank In Soap denovo
 
Dear all,
I am trying to use soap denovo tool for my large data assembly.
I have some doubts regarding that..
  • what is rank in config file
  • can we run multiple Kmers in a single run..??
  • Number of iterations it will follow..?? If it more than one, can we specify..??
  • can we specify minimum contig size needed in the output..??

ECO 08-31-2011 11:05 PM

Totally wrong place for this post. Apologies for not seeing it sooner. Welcome to the site, feel free to repost this in either the de novo forum or the Bioinfx forum.


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