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-   -   clustering short reads (http://seqanswers.com/forums/showthread.php?t=3869)

lpantano 02-02-2010 03:34 AM

clustering short reads
 
Hello, and sorry if in some other thread is the answer. But I would like to cluster short reads from solexa technology. These reads are from 15 nt to 26 nt long. Do you now some program that does it???

thanks very much

maasha 02-02-2010 04:39 AM

Uclust by Bob Edgar

Zigster 02-02-2010 06:56 AM

vmatch is pretty good at this


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