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-   -   piRNAs sequence files in fasta format for rat and mapping small RNA seq reads (http://seqanswers.com/forums/showthread.php?t=23925)

TJC 10-08-2012 02:11 PM

piRNAs sequence files in fasta format for rat and mapping small RNA seq reads
 
I would like to search in my small-rna sequence set for pirnas and mirna. I managed to quantify the mirnas from the small-rna sequences.

I would like to know if there is any tool to find or predict the pirnas in the small-rna sequence dataset?
Also, Is there any repository for pirnas where I can download the pirnas for rat in fasta format?

Any information will be helpful.
Thanks in advance
TJC


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