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-   -   Genome Sequencing Service that provides raw, untrimmed and unassembled output data? (http://seqanswers.com/forums/showthread.php?t=24511)

newkid 10-28-2012 06:13 PM

Genome Sequencing Service that provides raw, untrimmed and unassembled output data?
 
Are there service providers that can just run purified, and amplified DNA through a sequencer and provide me with the output?

The data won't need to be trimmed, or assembled. Just looking for raw, single end, short bp reads.

Most service providers I've found seem to include assembly as a part of their service.

Any pointers or advice to help in my hunt would be much appreciated too.

GenoMax 10-29-2012 03:46 AM

A minimal amount of QC needs to happen as a part of the pre-processing of sequence data (generally via vendor software). You obviously do not want to get reads that are mixed (two clusters merged/close together) etc.. But other than that most providers should give you untrimmed full length sequence data files.

There is a list of service providers here: http://seqanswers.com/wiki/Service_Provider It does not appear to be working at the moment. Hopefully site admins will rectify that soon.

newkid 10-29-2012 06:41 PM

Looks like the link is up!

Thanks


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