SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   Algebraic operations with genomic occupancy data (http://seqanswers.com/forums/showthread.php?t=79322)

__sequence 11-24-2017 05:32 PM

Algebraic operations with genomic occupancy data
 
Hi all,

What is a proper software to calculate the average between several genomic coverage signals (e.g. several ChIP-seq replicates, with single base-pair resolution)?

Thanks!

malcook 11-24-2017 11:02 PM

wiggletools - you will probably want your bigwigs to be normalized, possibly as made easy with deepTools

__sequence 11-25-2017 03:20 AM

Quote:

Originally Posted by malcook (Post 212940)
wiggletools - you will probably want your bigwigs to be normalized, possibly as made easy with deepTools

Thank you! Is there also a software that allows to perform such operations with BedGraph files?


All times are GMT -8. The time now is 03:28 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.