I am getting a seq length-qual length mismatch with tophat (2.0.0 and 2.0.3). Has anyone seen this or knows possible remedy. Surprisingly same program with same input work fine on a different system. A different input works fine on the same system. Confusing as hell so far .... any comments plz
I see this error is posted before, but none of the explain my case. I have illumina 50 bp PE
I see this error is posted before, but none of the explain my case. I have illumina 50 bp PE
Code:
[2012-07-07 02:23:20] Mapping test_reads against mm9 with Bowtie2 [2012-07-07 08:51:26] Preparing reads [FAILED] Error running 'prep_reads' Error: qual length (50) differs from seq length (9) for fastq record !
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