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-   -   Tools for Enrichment Analysis (http://seqanswers.com/forums/showthread.php?t=77318)

gkuffel 07-28-2017 10:50 AM

Tools for Enrichment Analysis
 
Hi everyone,

I manage a NGS core and I am a Bioinformatician by training. I use my favorite tool DESeq2 for all of my differential expession analysis. Many users are asking for enrichment analysis. Can anyone recommend a tool or a R package that works well with DESeq2 data for enrichment/pathway analysis of RNA-Seq data?

Thanks so much.

bigmw 07-28-2017 04:09 PM

RNA-Seq pathway or gene-set analysis workflow with GAGE/Pathview
https://bioconductor.org/packages/re...eqWorkflow.pdf

Seqanswer thread
http://seqanswers.com/forums/showthread.php?t=34679


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