SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   how to calculate circRNA and mRNA expression level without depletion linear RNA? (http://seqanswers.com/forums/showthread.php?t=63741)

huan 10-26-2015 01:05 AM

how to calculate circRNA and mRNA expression level without depletion linear RNA?
 
I have used CIRI software to identify circRNA. how to calculate circRNA and mRNA expression level without depletion of linear RNA? Is there any tools or workflow avaliable for this?
Thanks a lot!

Enraico 05-17-2017 01:46 AM

I have just read your post and maybe our tool "CirComPara" suits your needs (if you still need it, I see the post is quite old). It is an automated pipeline that performs linear transcript and gene expression analysis, and circRNA detection, quantification and characterization, also correlating linear and circular expression patterns.
It's availabe from here https://github.com/egaffo/CirComPara and the related paper describing it http://www.mdpi.com/2311-553X/3/1/8.


All times are GMT -8. The time now is 12:28 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.