Hi,
I have been trying to use topcons membrane prediction.
I am trying to run the consensus one, but I am stuck with
of octopus.
I am stuck at this.
Running topcons is a 3 step process:
1) get file from run_blast.sh
2) process that output for modhmm profile
3) create .mtx file
The read_me file doesn't say clearly.
It has instructions based on OLDER version of Blast.
Can someone please help me with this?
There is an other way round this:
1) run_topcons_single.sh
2) run_topcons.sh
I fail to understand which one to use and how.
I have the dependencies for TOPCONS.sh in my PATH.
I need this prediction on standalone tools.
I have a protein file with 35 protein sequences and I have 20 such files.
Any help shall be greatly appreciated.
Thank you.
I have been trying to use topcons membrane prediction.
I am trying to run the consensus one, but I am stuck with
Code:
run_blast.sh
I am stuck at this.
Running topcons is a 3 step process:
1) get file from run_blast.sh
2) process that output for modhmm profile
3) create .mtx file
The read_me file doesn't say clearly.
It has instructions based on OLDER version of Blast.
Can someone please help me with this?
There is an other way round this:
1) run_topcons_single.sh
2) run_topcons.sh
I fail to understand which one to use and how.
I have the dependencies for TOPCONS.sh in my PATH.
I need this prediction on standalone tools.
I have a protein file with 35 protein sequences and I have 20 such files.
Any help shall be greatly appreciated.
Thank you.
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