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-   -   Default Blasting an unknown protein with a predicted pattern (http://seqanswers.com/forums/showthread.php?t=94019)

jekslein 04-23-2020 06:19 AM

Default Blasting an unknown protein with a predicted pattern
 
Hello,

I want to blast a certain pattern that I think exist in my protein. I know the organism where the protein is expressed, but I don't know the identity or the sequence of the protein. I also have an idea about the total length of the protein and where my pattern of interest might lie.

I looked into phi-blast but it requires that I provide a sequence! myloweslife Can I provide a sequence made up of wild cards corresponding to the length of my protein? How to restrict the pattern searching to a certain location in the sequence?

renyongzhe19 08-23-2021 01:20 AM

how to set the input sequence?


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