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hamcan 02-13-2017 06:57 PM

PCoA Plots
Hi Everyone,
I have HiSequencing data that I want to set up PCoA plots for.
These are environmental samples and I want to look at the diversity between the samples in terms of taxonomy.
What programs can I use for PCoA ?
I know R is one option but I have not been able to find a comprehensive tutorial on how to use it.
Thank you

thermophile 02-14-2017 10:17 AM

I recommend Legendre's Numerical Ecology with R for learning how to do multivariate stats in R. Your uni may have it as an ebook

fanli 02-16-2017 09:29 AM

I like the phyloseq R package:

If you are new to metagenomics work, you may want to start here:

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