PCoA Plots
 

Hi Everyone,
I have HiSequencing data that I want to set up PCoA plots for.
These are environmental samples and I want to look at the diversity between the samples in terms of taxonomy.
What programs can I use for PCoA ?
I know R is one option but I have not been able to find a comprehensive tutorial on how to use it.
Thank you

I recommend Legendre's Numerical Ecology with R for learning how to do multivariate stats in R. Your uni may have it as an ebook

I like the phyloseq R package:
https://joey711.github.io/phyloseq/

If you are new to metagenomics work, you may want to start here:
http://qiime.org/