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-   -   How to conduct raxmlHPC analysis? (http://seqanswers.com/forums/showthread.php?t=88342)

dineshkumarsrk 03-23-2019 03:35 AM

How to generate partition file for raxmlHPC analysis?
 
Hi all, I need to conduct evolutionary analysis by raxmlHPC, wherein I have to to follow the model as given below,

Quote:

partition model-maximum likelihood phylogeny by GTR GAMMA model of substitution with 100 nonparametric bootstrap
I have phylip alignment file generated by CLUSTALW, which consist 31 bacterial strains (each strain consist of 29 concatenated gene sequences). Therefore, please let me how to create partitioned file?


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