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dineshkumarsrk 03-23-2019 03:35 AM

How to generate partition file for raxmlHPC analysis?
Hi all, I need to conduct evolutionary analysis by raxmlHPC, wherein I have to to follow the model as given below,


partition model-maximum likelihood phylogeny by GTR GAMMA model of substitution with 100 nonparametric bootstrap
I have phylip alignment file generated by CLUSTALW, which consist 31 bacterial strains (each strain consist of 29 concatenated gene sequences). Therefore, please let me how to create partitioned file?

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