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fripeki 04-24-2019 07:45 AM

Repeatscout output
Hello, I have mygenome.fa and I used repeatscout to produce mygenome_repeats and then I filtered it. Now I have mygenome_repeats_filtered.fa. what is the next step? I use repeatmasker using this mygenome_repeats_filtered.fa with mygenome, but repeatmasker didn't find any TE. What is the input in -lib? I have installed repbase from girinst.
Thank you

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