I am currently in the possession of the following:
7x CPU
16 GB memory
and a GeForce GTX 670 GPU
Now I was testing CUDA BLAST and basically you can set the database up with three different parameters as far as I could find. Namely the following:
-gpu_blocks
-gpu_threads
-max_file_sz
Now I had a script running that combines a various of settings and then ran BLAST. The speed for all vs all of 1308 proteins varied from 55 seconds to 19 seconds. Now I was curious how do I know what is the best setting beside trying out all possible combinations?
I should have 1344 CUDA Cores on the GPU.
7x CPU
16 GB memory
and a GeForce GTX 670 GPU
Now I was testing CUDA BLAST and basically you can set the database up with three different parameters as far as I could find. Namely the following:
-gpu_blocks
-gpu_threads
-max_file_sz
Now I had a script running that combines a various of settings and then ran BLAST. The speed for all vs all of 1308 proteins varied from 55 seconds to 19 seconds. Now I was curious how do I know what is the best setting beside trying out all possible combinations?
I should have 1344 CUDA Cores on the GPU.
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