I have a list of mutations with their chromosomal locations like
chr1:6266188-6266188
chr22:5443534-5443534 .....
I know how to fetch a list of genes with ucsc browser and/or galaxy that intersects with my mutations. and their accompanying DNA sequence
But in order to know wich nucleotide in the gene sequence is mutated I have to know the position in the gene.
Is there a way to convert the chromosomal position to nucleotide position in a gene. so that I can easy invistigate what kind of mutation it is.
dream result would be:
gene1 blabla lenght: 1...789 your mutation is in place 88
or actaXacta
or actaNacta
chr1:6266188-6266188
chr22:5443534-5443534 .....
I know how to fetch a list of genes with ucsc browser and/or galaxy that intersects with my mutations. and their accompanying DNA sequence
But in order to know wich nucleotide in the gene sequence is mutated I have to know the position in the gene.
Is there a way to convert the chromosomal position to nucleotide position in a gene. so that I can easy invistigate what kind of mutation it is.
dream result would be:
gene1 blabla lenght: 1...789 your mutation is in place 88
or actaXacta
or actaNacta
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