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-   -   How to index a genome for BLAST (http://seqanswers.com/forums/showthread.php?t=25612)

Avro1986 12-10-2012 12:23 PM

How to index a genome for BLAST
 
Hi everyone!

I have just installed BLAST+ 2.2.27 on my mac. I want to run some cDNAs against arabidopsis thaliana's genome. I know I need to download the genome and format it for BLAST searches but I don't know how.

I would greatly appreciate any help.

Thank you very much for your time!

ucpete 12-10-2012 01:25 PM

makeblastdb -in <genome.fasta> -dbtype nucl

Avro1986 12-10-2012 01:49 PM

Thank you!


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