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-   -   MACS peaks.bed (http://seqanswers.com/forums/showthread.php?t=8778)

khb 01-10-2011 06:13 AM

MACS peaks.bed
 
Hi
I wounder how MACS score the peaks. When you run MACS you get a output peaks.bed, this file include chromosome, start, stop, peaknumber and a score. How does MACS create this score? Does the length of the peak affect the score value?
Thanks

rebrendi 03-25-2012 05:03 AM

is it really the score in the last column of the "NAME_peaks.bed" file?


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