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-   -   gene name and position list in a chr* of a genome (http://seqanswers.com/forums/showthread.php?t=29332)

sirmark 04-16-2013 01:28 AM

gene name and position list in a chr* of a genome
 
Hi all!

How can I obtain a list of gene on a chromosome ?

I need know the set of genes in chrX on hg18,
I would gene name, start:end position.

thanks for support!

mastal 04-16-2013 01:37 AM

gene name and position list in a chr* of a genome
 
try BioMart,

http://www.biomart.org/

sirmark 04-16-2013 01:39 AM

ok, I solve here:
http://genome.ucsc.edu/cgi-bin/hgTables

but if I want start:end position of each gene,
what do I must select from the following ?
strand: + or - for strand
txStart: Transcription start position
txEnd: Transcription end position
cdsStart: Coding region start
cdsEnd: Coding region end
exonStarts: Exon start positions
exonEnds: Exon end positions

sirmark 04-16-2013 01:49 AM

ok I solve from my link!
thanks !


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