SEQanswers (
-   Bioinformatics (
-   -   Phyton - Find gene ID from genome coordinate (

Andrea_G 01-24-2015 09:36 AM

Phyton - Find gene ID from genome coordinate
Hi All,

I'm developing a Python tool to find gene translocation from NGS data. After alignment and reads selection, I would like to obtain their gene ID by genome coordinate.

I tried to googling but without success:confused:. Do you now how can I do it?



brentp 01-24-2015 07:14 PM

import cruzdb

g = cruzdb.Genome('hg19')
g.bin_query('refGene', 'chr1', 1234567, 1234568).all()

Andrea_G 01-24-2015 11:48 PM

Ok, nice module. It works.

Thank you brentp!

All times are GMT -8. The time now is 09:04 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.