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  • convert vcf into bed format

    Hi,

    I have set of (huge) data mapped against hg19 build and generated SNPs in gff3 and vcf format. Now I would like to use lift over hg19->hg18 .
    I would like to know if LiftOver supports gff3 and vcf format,

    liftOver -gff3 oldFile hg19ToHg18.over.chain newFile unMapped

    if not, is there any method in which we can convert these formats into BED format ?

    Thank you...
    Last edited by nans_bn; 08-02-2011, 04:22 AM.

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