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-   -   consed newbie: how to export scaffold information (http://seqanswers.com/forums/showthread.php?t=4553)

agroster 04-01-2010 04:26 PM

consed newbie: how to export scaffold information
 
Hi, I recently ran a MIRA assembly of my 454 data and saved it to .ace file format. I can open it in consed with the -nophd function and consed will assemble the contigs using mate-pair data.

Question: how do I export the sequences of the scaffolds?

I'd like to get the scaffolds in fasta format to compare it to scaffolds made by Celera Assembler.

Thanks for your help!

ag.


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