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Antony03 08-07-2014 04:03 PM

fasta35 VS fasta36

I need to use, for a specific job, fasta35 and not fasta36. However, the result is clearly not the same between both.

fasta35 gives only 1 alignment:

while fasta36 gives 3 alignments:

What I'm doing wrong with fasta35? It is probably not normal that it misses almost 2 perfect alignments on 3.

Thank you!

maubp 08-08-2014 01:05 AM

This is a new feature in fasta36

P.S. This question is a duplicate of a BioPerl mailing list thread where Chris gave a more detailed answer:

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