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-   -   SNP detection with bcftools where [main] unrecognized cammand error occurs (http://seqanswers.com/forums/showthread.php?t=50589)

Anuja jain 02-25-2015 09:46 PM

SNP detection with bcftools where [main] unrecognized cammand error occurs
 
hello friends

I am very new comer in the field of genomics and transcriptomics as well as in SEQanswers site so kindly help me to sort out the following error.

When i am giving "bcftools call -mv variation.bcf > variation250.vcf " command to bcftools that already present inside the SAMtools-0.1., it shows [main] unrecognized error while I have already set the path of bcftools.

It also give the same error with "bcftools stats variation_filter.vcf > variation_stats.vchk" command.

What should i do to solve this problem ?

thanks in advance

madhavi 02-26-2015 03:21 AM

hii everyone
samtools showing an error when i tried to create a bcf file
[bcf_sync] incorrect number of fields (0 != 5) at 0:0 [afs] 0:0.000
how to solve this? thank u


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