![]() |
Error in Sam to Bam Conversion
Dear all,
I want to convert Sam file into Bam. I am using command $ samtools view -b -S -o bowtie.glob.bam bowtie.glob.sam but getting error Parse error at line 25645: invalid CIGAR character Could someone please help me to solve this problem? Thanks! |
Hi,
Did you make sure that bowtie gave you a sam file as output? In case it didn't check the following post and this might be useful. http://seqanswers.com/forums/showthread.php?t=8974 |
All times are GMT -8. The time now is 03:21 PM. |
Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.