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-   -   de novo assembler for se 36 bp illumina reads (http://seqanswers.com/forums/showthread.php?t=29694)

srividyanathan 04-26-2013 04:34 AM

de novo assembler for se 36 bp illumina reads
 
Hi,

I am wondering if there is any de novo assembler that can work with 25x coverage 36 bp solexa reads. I saw that a few requires paired end reads to work with. Some others require longer reads. Can anyone suggest any software that can work with these reads,

thank you,

mastal 04-26-2013 05:07 AM

de novo assembler for se 36 bp illumina reads
 
Velvet should work.

sivasubramani 05-28-2013 08:52 AM

try minia... fast and memory efficient..

Good luck..


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