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-   -   index file of phiX to use in Bowtie (http://seqanswers.com/forums/showthread.php?t=16920)

wingtec 01-17-2012 08:55 AM

index file of phiX to use in Bowtie
 
Hi All,

I wonder if someone can direct me to find a copy of the index file for phiX to be used in Bowtie. I am pretty sure someone has made it available somewhere.

Best,

Yongde

kopi-o 01-17-2012 09:01 AM

Why not download the phiX genome sequence and run bowtie-build on it? It won't take a minute.

wingtec 01-17-2012 11:22 AM

Thanks. You are absolutely right. It is much easier building your own than looking for one.

Yongde

gringer 01-18-2012 02:51 AM

I've had matches to regions spanning the start/end sequence (i.e. to a circular phiX genome) on an Illumina run, so it might be worth tacking a few bases from the start of the sequence onto the end of your sequence.


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