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-   -   HTSEQ results format when using refseq hg19 (http://seqanswers.com/forums/showthread.php?t=24505)

narges 10-28-2012 07:44 AM

HTSEQ results format when using refseq hg19
 
Hi,
I think I am not familiar with gene id representations so I am confused about the results I found in read count file resulting from HTSEQ.
In order to obtain the file refseq hg19 has been used as the reference.
Below is the file format :
1/2-SBSRNA4 2
A1BG 86
A1BG-AS1 17
A1CF 1
A2LD1 59
A2M 5
A2ML1 0
A2MP1 0
A4GALT 592
A4GNT 0
.
.
I expected to see refseq format like "NM_???????" as the gene identifier but the file represents another notation of genes why is this so?
Thanks in advance


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