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-   -   RNAseq .wig files (http://seqanswers.com/forums/showthread.php?t=45818)

KellerMac 08-14-2014 02:26 PM

RNAseq .wig files
 
Hello all! I need to analyze some RNAseq data in .wig (wiggle) format, that I obtained from a paper, but I am unfamiliar with this format. I want to filter for a certian set of genes (ovary related) and then sort based on differential expression. Have you had experience with .wig files? Can anyone point me in a helpfull direction?

GenoMax 08-14-2014 02:43 PM

Information about the .wig format: https://genome.ucsc.edu/goldenPath/help/wiggle.html

KellerMac 08-14-2014 03:24 PM

I found a post on BioStar that suggested using BEDOPS to convert to the more common BED file and proceed in analysis from there.


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