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-   -   analyze kallisto rnaseq data (http://seqanswers.com/forums/showthread.php?t=91469)

wingtec 10-24-2019 07:53 AM

analyze kallisto rnaseq data
 
Hi All,

I wonder how people analyze Kallisto data (estimated counts), using any bioconductor packages?

Thanks

Wingtec

asorbie 10-28-2019 03:45 AM

you can use the tximport package to import kallisto output into R and then just use DEseq2. See here:https://bioconductor.org/packages/re.../tximport.html


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