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luisnagano 02-08-2017 01:54 PM

Find Chip-seq targets in Rna-seq data?
Hi, I want to select my target genes found in my ChIP-seq data (Genes Names by HOMER) within my Cuffdiff output list of differentially expressed genes (RNA-seq data), so I can select cufflinks genes ids of target genes (“XLOC_” ids), selecting the lines table from my cuffdiff file where are the specific target genes names, so I can create heatmaps of these genes using RNA-seq data in R. Can someone give me a simple solution?
I just want select gene names lines in my cuffdiff table

Thank you!

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