SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   How can I select my Chip-seq genes (targets) in my Rna-seq data? (http://seqanswers.com/forums/showthread.php?t=74116)

luisnagano 02-08-2017 01:54 PM

Find Chip-seq targets in Rna-seq data?
 
Hi, I want to select my target genes found in my ChIP-seq data (Genes Names by HOMER) within my Cuffdiff output list of differentially expressed genes (RNA-seq data), so I can select cufflinks genes ids of target genes (“XLOC_” ids), selecting the lines table from my cuffdiff file where are the specific target genes names, so I can create heatmaps of these genes using RNA-seq data in R. Can someone give me a simple solution?
I just want select gene names lines in my cuffdiff table

Thank you!


All times are GMT -8. The time now is 07:43 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.