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-   -   Comparison of SNPs between case and control sample (http://seqanswers.com/forums/showthread.php?t=23572)

Maulik23 09-23-2012 04:47 AM

Comparison of SNPs between case and control sample
 
I want to compare the SNPs between case and control groups. Which software should I use?
Any help will be appreciated :)

ekg 10-01-2012 06:16 AM

For comparing case and control VCFs you can generate a kind of overlap comparison using this script and the utilities in vcflib: https://github.com/ekg/vcflib/blob/master/vcfmultiway.

For generating the variant calls, you have a lot of options :)

sindrle 01-21-2014 03:31 AM

Is it possibly that you may update the dead link?:)


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