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-   -   hg18 or hg19 (http://seqanswers.com/forums/showthread.php?t=3070)

Layla 11-09-2009 08:39 AM

hg18 or hg19
 
Does anybody know the difference between the following files for Bowtie?
File: h_sapiens_37_asm.ebwt.zip (27-08-09) and
File: h_sapiens_asm.ebwt.zip (18-02-09)
Files found from:
http://bowtie-bio.sourceforge.net/md5s.shtml

Is it a difference in the genomes or something else?
I want to be using hg18 version of the genome

Cheers

L

simonandrews 11-09-2009 11:38 PM

If you look at the 'pre-built indexes' panel on the right of that page you can see what the different files are.

The h_sapiens_37 comes from the new GRCh37 assembly from earlier this year. The h_sapiens_asm is the older NCBI36 assembly, which would correspond to hg18.


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