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-   -   Gene list for calculating coverage (http://seqanswers.com/forums/showthread.php?t=11485)

nseh 05-19-2011 11:34 AM

Gene list for calculating coverage
 
Hi all,

Does anybody know where I can find a list of genes in the format specified by GATK (http://www.broadinstitute.org/gsa/wi..._Coverage_v3.0) ??

Are you familier with any usefull tools other than BedTools and GATK for calculating coverage?

Best,
Nat.

DZhang 05-22-2011 07:31 AM

Hi,

I am not sure of the specifics of your project but you may try HTSeq.

Douglas
www.contigexpress.com


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