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-   -   In gene annotation table/gff3, why is same gene name appeared in different chromosome (http://seqanswers.com/forums/showthread.php?t=2701)

iloveneworleans 09-29-2009 08:54 PM

In gene annotation table/gff3, why is same gene name appeared in different chromosome
 
I found some genes with same gene name but in different chromosome, anyone knows the reason?
For example:
chr19 hg18_refFlat gene 763518 772952 . - . ID=PRG2;
chr11 hg18_refFlat gene 56911410 56914706 . - . ID=PRG2;

chr8 hg18_refFlat gene 38576850 38577932 . - . ID=RNF5P1;
chr6 hg18_refFlat gene 32254210 32256545 . + . ID=RNF5P1;

chr24 hg18_refFlat gene 1670486 1681411 . + . ID=SFRS17A;
chr23 hg18_refFlat gene 1670486 1681411 . + . ID=SFRS17A;

Does anyone tell me where I can find related introduction about this kind of problem? Thanks a lot!

polivares 01-14-2010 09:55 AM

Aren't chr23 and chr24 chrX and chrY ? I am facing a similar problem with some illumina data.


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