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kvk727 03-18-2013 01:20 PM

Sorting DESeq results
Hi All,
I would like to sort my DESeq (or edgeR) results based on different classes of genes (ie, call out all transcription factors represented in my differentially expressed resSig file). Does anyone know a way to do this?

Furthermore, is it possible to plot these different groups of genes in different colors in the plotMA or plotPCA commands?

Thanks so much in advance for the help, it is greatly appreciated!

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