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-   -   plant genomes at NCBI (http://seqanswers.com/forums/showthread.php?t=59659)

kaps 06-10-2015 12:33 AM

plant genomes at NCBI
 
Dear all,
There are genome sequences for various plants at ftp://ftp.ncbi.nlm.nih.gov/genomes/PLANTS/ which are of interest to me. However I cannot additional information about these sequences. I am more interested in supporting info about Vigna_unguiculata sequences.
Your help is welcome.

GenoMax 06-10-2015 01:09 AM

Looks like there is only BAC end clones for Vigna: http://vigun.comparative-legumes.org/.

kaps 06-10-2015 02:52 AM

I have looked at the link suggested and it appears the cowpea DNA used for BAC library preparation came from a back cross with a virus resistant variety? If that is the case then I think it would suit my purpose since I want to do a customised blast of contigs (from whole transcriptome sequencing) using BAC clones as the database.

Is the Vigna_unguiculata.BES.gz file at ftp site referring to BAC end clones?

GenoMax 06-10-2015 03:04 AM

They are BAC clone end sequences.


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