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-   -   how to change bowtie2 parameters (http://seqanswers.com/forums/showthread.php?t=21338)

claudyhenrix 07-02-2012 09:32 AM

how to change bowtie2 parameters
 
I want to make bowtie2 reject reads that are less than 15 bps long. Bowtie was built from source on my computer and I don't know in which of all the files I would have to make the changes, or is it just a terminal command I type in? If it is just a terminal command how exactly would I write it?


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