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-   -   SOAPsnpZ error : 'std::out_of_range' (http://seqanswers.com/forums/showthread.php?t=34368)

ashNZ 10-09-2013 06:17 AM

SOAPsnpZ error : 'std::out_of_range'
 
Gday all,

I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:


Reading Chromosome and dbSNP information Done.
terminate called after throwing an instance of 'std::out_of_range'
what(): basic string::substr


Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

Cheers
Ash

IBseq 11-30-2017 09:14 AM

hi
did you get an answer?

ib


Quote:

Originally Posted by ashNZ (Post 118415)
Gday all,

I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:


Reading Chromosome and dbSNP information Done.
terminate called after throwing an instance of 'std::out_of_range'
what(): basic string::substr


Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

Cheers
Ash



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